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@ParkerLab

The Parker Lab at the University of Michigan

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  1. ataqv ataqv Public

    A toolkit for QC and visualization of ATAC-seq results.

    C++ 74 11

  2. atactk atactk Public

    A toolkit for working with ATAC-seq data.

    Python 24 4

  3. bioinf545 bioinf545 Public

    ATAC-seq lab for BIOINF545

    Shell 24 13

  4. bioinf525 bioinf525 Public

    ATAC-seq lab for BIOINF525

    Shell 10 11

  5. BMO BMO Public

    BMO - a tool for predicting TF binding from ATAC-seq data

    R 9 1

  6. ATACseq-Snakemake ATACseq-Snakemake Public

    Forked from porchard/ATACseq-Snakemake

    Standard Parker Lab ATAC-seq processing pipeline in Snakemake form

    Python 7 1

Repositories

Showing 10 of 37 repositories
  • sn_muscle_2023 Public

    Code for snATAC + snRNA analyses

    ParkerLab/sn_muscle_2023’s past year of commit activity
    Python 1 0 0 0 Updated Apr 9, 2026
  • TSS_MPRA_2026 Public Forked from boseHere/TSS_MPRA_2025

    Code used to run elastic net, generalized linear models, and MPRAnalyze sub-analyses and interaction model for Bose et. al. 2026 islet TSS MPRA paper. DOI: 10.1101/2025.10.13.659964

    ParkerLab/TSS_MPRA_2026’s past year of commit activity
    R 0 MIT 1 0 0 Updated Apr 9, 2026
  • FAP_paper Public

    Discovering stimulatory state specific type 2 diabetes GWAS mechanisms with single-cell multi-omics on iPSC-derived fibro-adipogenic progenitors

    ParkerLab/FAP_paper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 31, 2026
  • bioinf545 Public

    ATAC-seq lab for BIOINF545

    ParkerLab/bioinf545’s past year of commit activity
    Shell 24 13 0 0 Updated Feb 17, 2026
  • atactk Public

    A toolkit for working with ATAC-seq data.

    ParkerLab/atactk’s past year of commit activity
    Python 24 GPL-3.0 4 2 1 Updated Jan 22, 2026
  • PanKbase-DEG-analysis Public Forked from hhvu0102/PanKbase-DEG-analysis

    Collection of code and documentation to replicate islet DEG analysis on PanKbase.

    ParkerLab/PanKbase-DEG-analysis’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Aug 28, 2025
  • PanKbase-scRNA-seq Public Forked from hhvu0102/PanKbase-scRNA-seq

    Collection of code and documentation to replicate islet single cell map on PanKbase.

    ParkerLab/PanKbase-scRNA-seq’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Jun 11, 2025
  • muscle_nfr_nucQTL Public
    ParkerLab/muscle_nfr_nucQTL’s past year of commit activity
    Python 0 0 0 0 Updated Jun 9, 2025
  • PanKgraph-finemap-coloc Public Forked from hhvu0102/PanKgraph-finemap-coloc

    Collection of code and documentation to conduct fine-mapping and colocalization analysis for PanKbase and PanKgraph.

    ParkerLab/PanKgraph-finemap-coloc’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Jun 6, 2025
  • albanus_2020_nih_islets_sn_t1d Public

    snATAC-seq + scRNA-seq analyses of healthy and AAB+ human islets

    ParkerLab/albanus_2020_nih_islets_sn_t1d’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 1, 2025
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