Cannot view the zarr "file" in napari with the view_zarr function after converting with the tiff_to_zarr function. The filenames of the 3D tiff images were prefixed with string placeholder_<channel name>_. From my understanding the value immediately following the underscore should be recognized as the channel name.
The GFF images were used to convert and view these images. I have attached the script in this issue along with the corresponding log files. If you have any question then feel free to reach out!
convert_and_view_tiff_napari.sh
files_and_dir.log
tiff_to_zarr.log
view_zarr.log
Cannot view the zarr "file" in napari with the
view_zarrfunction after converting with thetiff_to_zarrfunction. The filenames of the 3D tiff images were prefixed with stringplaceholder_<channel name>_. From my understanding the value immediately following the underscore should be recognized as the channel name.The GFF images were used to convert and view these images. I have attached the script in this issue along with the corresponding log files. If you have any question then feel free to reach out!
convert_and_view_tiff_napari.sh
files_and_dir.log
tiff_to_zarr.log
view_zarr.log