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@aristoteleo

Aristotle

Foundational software ecosystem for predictive genomics

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  1. PantheonOS PantheonOS Public

    Evolvable, distributed agent framework & harness for data science.

    Python 388 49

  2. dynamo-release dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    Python 489 61

  3. spateo-release spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    Python 334 43

  4. dynamo-tutorials dynamo-tutorials Public

    Tutorials on using latest dynamo package

    Jupyter Notebook 27 13

  5. spateo-viewer spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    Python 23 7

  6. tabula tabula Public

    federated learning with tabular learning

    Jupyter Notebook 28 4

Repositories

Showing 10 of 54 repositories
  • PantheonOS Public

    Evolvable, distributed agent framework & harness for data science.

    aristoteleo/PantheonOS’s past year of commit activity
    Python 388 BSD-2-Clause 49 6 4 Updated Apr 9, 2026
  • Navigo-release Public

    Package for the Navigo project: Generative Modeling of Mouse Embryogenesis for Fate and Disease Prediction

    aristoteleo/Navigo-release’s past year of commit activity
    Python 4 BSD-2-Clause 0 0 0 Updated Apr 7, 2026
  • Navigo-docs Public
    aristoteleo/Navigo-docs’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 7, 2026
  • awesome-skill-generate Public
    aristoteleo/awesome-skill-generate’s past year of commit activity
    Python 9 BSD-2-Clause 0 0 0 Updated Mar 20, 2026
  • dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    aristoteleo/dynamo-release’s past year of commit activity
    Python 489 BSD-3-Clause 61 1 14 Updated Mar 17, 2026
  • spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    aristoteleo/spateo-release’s past year of commit activity
    Python 334 BSD-2-Clause 43 5 11 Updated Feb 25, 2026
  • awesome-bioagent-papers Public

    Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.

    aristoteleo/awesome-bioagent-papers’s past year of commit activity
    Python 95 8 3 29 Updated Feb 10, 2026
  • qiu_lab_website Public

    The source code for the Qiu lab website (based on ato-neulab)

    aristoteleo/qiu_lab_website’s past year of commit activity
    HTML 0 MIT 0 12 0 Updated Feb 5, 2026
  • dynamo-tutorials Public

    Tutorials on using latest dynamo package

    aristoteleo/dynamo-tutorials’s past year of commit activity
    Jupyter Notebook 27 13 3 0 Updated Dec 21, 2025
  • epione Public

    Analysis of epigenetic data in Python

    aristoteleo/epione’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 1 1 0 Updated Oct 31, 2025
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