Add cloud_glob for improved cloud data performance#380
Merged
d33bs merged 6 commits intocytomining:mainfrom Oct 16, 2025
Merged
Add cloud_glob for improved cloud data performance#380d33bs merged 6 commits intocytomining:mainfrom
cloud_glob for improved cloud data performance#380d33bs merged 6 commits intocytomining:mainfrom
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gwaybio
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Description
This PR adds a new function
cloud_globfor improved large data access on cloud providers. We add AWS S3-focused capability here as a way of addressing the needs mentioned in #377 . Other cloud providers fall back to existing capabilities withincloudpathlib. I've also added a quick local test ofcpg0043-segmentationto ensure nested data are concatenated together properly when using nested data capabilities with CytoTable.The use case involves referencing data from Cell Painting Gallery dataset
cpg0043-segmentationwhich includes many nested objects (which causescloudpathlibby default to pause for a long time while loading data).References #377
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