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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 166 53

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 149 64

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 110 36

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 58 14

  5. palom palom Public

    Piecewise alignment for layers of mosaics

    Python 48 10

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 31 13

Repositories

Showing 10 of 182 repositories
  • tlsR Public

    Detection and Spatial Analysis of Tertiary Lymphoid Structures

    labsyspharm/tlsR’s past year of commit activity
    R 0 0 0 0 Updated Apr 9, 2026
  • cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    labsyspharm/cylinter’s past year of commit activity
    Python 31 MIT 13 1 0 Updated Apr 9, 2026
  • minerva-annotation-demo Public
    labsyspharm/minerva-annotation-demo’s past year of commit activity
    JavaScript 0 0 0 0 Updated Apr 8, 2026
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui’s past year of commit activity
    TypeScript 1 MIT 3 12 2 Updated Apr 8, 2026
  • ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    labsyspharm/ashlar’s past year of commit activity
    Python 166 MIT 53 59 13 Updated Apr 8, 2026
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 5 3 0 Updated Apr 7, 2026
  • Chen-Santagata-Kidney-2026 Public
    labsyspharm/Chen-Santagata-Kidney-2026’s past year of commit activity
    MATLAB 0 MIT 1 0 0 Updated Apr 6, 2026
  • cdk7-analysis Public
    labsyspharm/cdk7-analysis’s past year of commit activity
    R 0 0 0 0 Updated Apr 1, 2026
  • vae-paper Public
    labsyspharm/vae-paper’s past year of commit activity
    Jupyter Notebook 4 MIT 2 0 0 Updated Mar 31, 2026
  • okl-analysis Public
    labsyspharm/okl-analysis’s past year of commit activity
    Python 0 1 0 0 Updated Mar 26, 2026
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